As for me, томим - I was suffering from something.
Томиться в ожидании ( suffer from waiting for something/someone) - usually used in books, not in everyday life
Томиться в глуши (old-fashioned) suffer from staying at a place where are not any entertainments, it is usually far from cities - we usually don't use it in modern books
Томиться в заключении - to suffer from boredom (em, =to be bored) in prison, to suffer from lack of freedom in prison
Томиться робостью, ревность - to suffer from strong feelings. - usually we don't use in speaking or modern books but everyone knows that it is Pushkin. You can use it for special occasions while referring to Pushkin, making an allusion