My guess, based on the situation, would be that she meant "of course, it's fine, don't worry about it. Take your time", something like that. That's based on my hope that they wouldn't intentionally be really rude to you.
However, it could also mean "Of course you didn't realise it, you idiot". Which, as I say, would not be very nice.
It's all down to intonation and how they seem to be acting, so it's hard to tell from a written account. Don't forget that native speakers misjudge situations sometimes too. It's not always easier to interprete what someone meant, but I would like to give her the benefit of the doubt :)