No, we wouldn't say that. We would always phrase this statement as "I don't think we've met before". Or, if you wanted to say 'we've not met before', you'd use a tag question: "We've not met before, have we?"
If you were to say "I think we've not met before" people would understand you, but it would sound strange and unnatural.
A general rule is that we always put the negative element as near to the beginning of the statement as we can.