Hello Shen,
Someone's connections are the people who they know or are related to, especially when they are in a position to help them.( Notice that "connections" here is a plural noun).
Having important connections is being related or befriended in a way or the other with key personalities in a certain society ,who have some power or authority to help achieve someone's goals or give them support in any matter.
In your sentence Jonathan's family is related to powerful ,influential or affluent people in the society, so despite their little wealth their contacts remained an asset for them.