Your sentences say that the students drive themselves to school using a car that belongs to their parents. Is that what you meant to say? If that is not what you meant to say then both sentences are wrong.
The first sentence is correct. I would prefer "car" since a student can only drive one car, but "cars" is not wrong because all the parents together have many cars.
The second is also correct, but several improvements could be made:
Use singular "car"
"in", "with", or "using" their parents' car