His house burnt down.
This is an affrimative statement about an event that happened once in the past, therefore we use the simple past tense of the verb burn = burnt.
His house has burnt down [present perfect tense, and it is usually followed by another statement related to time or the number of similar events that have occurred in the past, such as: again, for the first time].
His house had burnt down. [past perfect tense, and it is usually followed by another statement related to another event which ocurred before the most recent event, for example: His house had burnt down before he had a chance to buy fire insurance on the house.
His house was burnt down. [this is the passive verb form/aspect which means that the action (burning) was caused by someone or something. Usually we would include the cause of the house burning, for example: The house was burnt down by two young boys.
example: The house was burnt down because/when it was struck by lightning.