All three sentences are correct. Consider these sentences:
What was it that you really liked? ("What" is singular but doesn't require that the answer be singular)
I really liked these subjects. (no problem here. you can think of "these subjects" as a plural or as the single thing that is liked, a collection (singular noun) of subjects)
I really liked these. (same)
It was these that I liked. (same sentence, really)
It was these subjects that I liked. ("subjects" just adds a bit of clarification)