Hello again!
If there's nothing following the statement, you wouldn't use a past perfect continuous. You'd only use a past perfect if this period led up to a significant point e.g. "...I had been cooking cutlets in a restaurant every day for three months when suddenly I had a revelation." (or some other event happened).
In the absence of another key point of reference ( i.e. what brought those three months to end), you would use a past tense rather than a past perfect: either 'I cooked' or 'I was cooking'.