Im curious what the incorrect word order was that the proofreader flagged.
In the case of “very”, you have to put it between “a” and an adjective. (“A very good time”, “A very effective method”)
But in the case of “quite “ you may put it either before or after the “a”. (“Quite a good time”, quite an effective method “) or (“A quite good time”, “A quite effective method“). The first is more common but the second is also correct.
Before a noun, though, “quite” has to be used before “a”. (“We had quite a time!”, “He’s quite a guy.”) In this usage, by the way, “quite” is still an adverb. It is modifying an unstated adjective. And that adjective might be positive or negative. Strange!