Decir can mean "say" or "tell"
Dime lo que pasó (tell me what happened)
Diga los números del uno al veinte en chino (say the numbers from 1 to 20 in Chinese)
But "contar" can only be used in the sense of "telling" (as in telling a story) but never in the sense of "saying".
Él me contó todo lo que hiciste (he told me everything you did).
Also, "contar" may mean "to count" as in counting money.
Tengo que contar las cajas y los libros que están en esta habitación
I have to count the boxes and books that are in this room.
"Pregunta" as a noun means "question"
No entiendo su pregunta (I don't understand your question)
"Cuestión" is a "matter"
Quiero analizar la cuestión profundamente (I want to consider the matter deeply)
I hope this helps.