As a general rule, if you 'make' something, you create something that wasn't there before. Here are some examples and common set phrases. If you don't know any of them, just check them in the dictionary - they're all common and useful phrases.
Make a pizza
Make a noise
Make an enquiry
Make a fuss
Make a mess
Make a complaint
Make a big deal of something
If you 'do' something, it's often a job or a task and you simply need to perform it. For example:
Do a job
Do the gardening
Do an exam
Do an interview
Do a test
Do some cleaning
There are some exceptions, but this is a general rule that should help you.
The important thing to remember that you should never translate a phrase 'word for word' directly from Spanish. You should always find out how to say the phrase in English and learn the complete English phrase.