Yes, we use "going to have to go" often.
Common examples: "I am going to have to go to the doctor tomorrow." "I'm going to have to go buy a new car battery because mine died."
"I'm going to..." is just a statement that you will be going ex., "I am going to the doctor tomorrow". You could have a standing appointment or a routine physical and it has been planned for a long time. "I am going to have to go to the doctor tomorrow" expresses a need to go whether you want to or not (maybe you just sprained your ankle or a nagging cough) and most likely that it isn't pre-planned, although it could be and you might just not want to go so are lamenting that you have to go.