Yes, definitely 'wood fire'. Like 'coal fire', 'gas fire' and so on.
'Wooden' is an adjective referring to the material that something is constructed from e.g. wooden table, wooden chair and so on. You might have a wooden fireplace (meaning the wooden surround and mantlepiece), but you could not have a wooden fire.
The chimney is the tall, narrow vertical ventilation structure which takes fumes and smoke from the fireplace upwards and out of the top of the house. If you get a fire inside that, you're in trouble!