They're same except 하루하루 can't be used as an adverb.
For example, you can say "매일매일이 행복하길 바라. or 하루하루가 행복하길 바라." when you want to say "I wish everyday is a happy day for you." to your Korean friend.
Also, you can say "I study Korean everyday. 난 매일매일 한국어를 공부해." to them, but you can't say "난 하루하루 한국어를 공부해."
하루하루 is lighter/cuter than 매일매일. 매일매일 is 每日每日 in Chinese character.
Hope this helps.