In British English, 'disabled toilet' is the standard expression to refer to a cubicle with a toilet - restroom in US English - for people who have disabilities. A disabled toilet has to be large enough to accommodate a wheelchair. It has handrails, and all the facilities, for hand-washing and so on, are accessible from a seated position. Sometimes the toilet itself - height, seat, flushing control - is also specially adapted for users with a disability.
I would not assume that 'disabled toilet' meant that it was out of order, unless the sign had been written by a non-native who was unfamiliar with the usual meaning of the phrase. To 'disable', when referring to a mechanism, means to deliberately render non-functioning. For example, a burglar might disable an alarm by pulling its wires out, so that it wouldn't sound. This doesn't really make sense in the context of a sign on a toilet.